Tractoflow main.nf fail

#1

Hi Tractoflow team,
I am attempting to run your pipeline on some OASIS DWI data on a CentOS HPC running SLURM.

I have successfully built a tractoflow image, and the HPC team has added singularity 3.6.0 and Nextflow 20.04.1 to the modules.

Upon running, I recieve the following error:

N E X T F L O W ~ version 20.04.1
Pulling nextflow-io/tractoflow …
Remote resource not found: https://api.github.com/repos/nextflow-io/tractoflow/contents/main.nf

I have downloaded the main.nf and nextflow.config from your repo, but to no avail.

Any ideas?

Many Thanks,
Chris

#2

Hi @FL33TW00D,

Did you download the code and the container using manual command or the easy install command ?

1 Like
#3

Hi @Guillaumeth,
Previously I tried building the singularity imaging myself. I have just downloaded and used the easy install method, but still recieve the same error.

The image I am currently using is: tractoflow_2.1.1_650f776_2020-07-15.img

The error is the same as previously.

Any ideas?

Many Thanks,
Chris

#4

Hi @FL33TW00D,

Thanks for the informations. Can you send me what you ran to download TractoFlow. Do you have a folder that looks like tractoflow-2.1.1 ?

Best

Guillaume

1 Like
#5

Hi @FL33TW00D ,

Did you manage to make Tractoflow work ?
If so, can you reply with your fix and finally can you mark this thread as solved ? It helps sort the different issues.

Thank you in advance
Arnaud

#6

Hi @abore,
Unfortunately I did not, but that was not Tractoflows fault.

I moved to QSIPrep due to the acquisition protocol of my data.

Many Thanks,
Chris

MANAGED BY INCF