Summary of what happened:
Dear fMRIPost-AROMA experts,
I have been running fMRIPost-AROMA across several datasets. While it worked well and usually only took a couple hours for most sites, it took an usually long amount of time to run for one particular site and generated a large volume of interim files (10 TB for around 100 participants). As such, the job could not finish for any participants from this site. The primary difference for this site is that it contains two task runs per session (only one session per participant). fMRIprep using version 25.2.5 ran successfully for all sites. I have included the relevant output log.
Many thanks in advance for your time and help with this.
Best,
Connie
Command used (and if a helper script was used, a link to the helper script or the command generated):
apptainer run -B "${fmriprepdir}":"${fmriprepdir}" --cleanenv /gpfs1/home/a/r/arazi/software/fmripost-aroma_0.0.12.simg ${fmriprepdir} ${fmriprepdir}/Postfmri_AROMA/ participant --participant-label "${subject}" --derivatives fmriprep=${fmriprepdir} --denoising-method orthaggr --error-on-warnings -w ${workdir}/${SLURM_JOB_ID}_${SLURM_ARRAY_TASK_ID} --skip_bids_validation --low-mem
Version:
0.0.12Environment (Docker, Singularity / Apptainer, custom installation):
ApptainerData formatted according to a validatable standard? Please provide the output of the validator:
PASTE VALIDATOR OUTPUT HERE
Relevant log outputs (up to 20 lines):
Run1_output_Log.txt (68.8 KB)
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