Hi there!
I’m new to fMRIprep. I’ve now got it working well, but I’m wondering - is there a built-in workflow to use fMRI prep to perform additional preprocessing (like motion correction?) I know fmriprep outputs motion estimates/parameters, but is there a functionality to regress these out of the functional series?
Thanks a lot
Ben
Motion correction is performed by fMRIPrep. If you want to regress out the motion parameters, then that can be done in tools like regfilt or by adding them as nuisance regressors to a GLM.