I have an already CAT12-preprocessed data set of structural MRI images. I would like to use MRIQC to get an overview of the image quality of each image. Also for some subjects, there are multiple images and I would like to use MRIQC to have a more objective rationale for selecting the ‘best’ image for each subject. Is it possible to use MRIQC to do this? My dataset is not BIDS-conform due to various issues that come along using CAT12 for preprocessing (see this issue and this issue)
For instance, I stumbled upon mriqc.reports.group.gen_html which looks promising, but I couldn’t find any documentation on the csv_file argument. Is it possible to simply provide MRIQC with a list of paths of preprocessed NIFTI-files to create such an anatomical report?