Using nipype docker image in detached mode

Software Support
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1

Hi !

I’ve the following issue while running the nipype/nipype:py38 docker container in detached mode rather than in interactive.
Please let me know if you have any clue of what is happening. Thanks !

Interactive mode

# Starting a container in interactive mode (option -i)
docker pull nipype/nipype:py38
docker run --rm -it nipype/nipype:py38

# Installing requests from inside the container
pip install requests
    Requirement already satisfied: requests in /opt/miniconda-latest/envs/neuro/lib/python3.8/site-packages (2.28.1)
    ...

# Checking conda information from inside the container
conda info
    active environment : neuro
    active env location : /opt/miniconda-latest/envs/neuro
    ...

Detached mode

The conda environment neuro is not activated, pip is not recognized

# Starting a container in detached mode (option -d)
docker pull nipype/nipype:py38
docker run --rm -dt --name narps_open nipype/nipype:py38

# Trying to install requests from outside the container
docker exec narps_open pip install requests
    Error: crun: executable file `pip` not found in $PATH: No such file or directory: OCI runtime attempted to invoke a command that was not found

# Checking conda information from outside the container
docker exec narps_open conda info
    active environment : None
    ...