I am hoping to use a nipype interface to process fMRIPrep outputs through freesurfer’s FSFAST pipeline.
Is the ‘nipype.interfaces.freesurfer.base.FSCommand’ class meant to be an interface to run any freesurfer command line arguments? Or is it just a basis for other nipype/freesurfer functions? I was not able to get it working on it’s own.
Does anyone have experience with this?