Has anyone used the Wisconsin White Matter Hyperintensity Software? I’m having difficult applying their specific naming convention. My data is typically named as follows: STAK1003-1a301.T1.nii. I’ve tried a few permutations based on their naming conventions, and they haven’t worked. Any ideas?
Naming convention info:
[Batch Name][Unique Identifier][BRAVO\FLAIR].nii
[Batch Name][Unique Identifier][BRAVO\FLAIR].nii
[Batch Name] = This is a name that summarizes the whole batch. It could be a study name or group name that all of the images come from. the batch name should be the same on all files. NOTE: This script takes the first
Batch Name it is given and assumes that this is the name for every subject in the batch. (This is not always the first image.)
[Unique Identifier] = This must begin with an integer (i.e. subject number) that follows the batch name. After the integer you may have additional identifiers such as a string. The Unique Identifier MUST BE THE SAME for the correspoding T1 and T2 images.
[BRAVO\FLAIR] = The string ‘BRAVO’ or ‘FLAIR’ must be present somewhere in the filename AFTER the the integer that is a unique identifier
SOME EXAMPLES (that they give)
“mrt87flair.nii” “mrt87bravo.nii”
“mrt 87 FLAIR.nii” “mrt 87 BrAvO.nii”
“mrt_87_v2_Flair_ver1.nii” “mrt_87_v2_Bravo_ver1.nii”
“mrt87_v2_ver1_FLAIR.nii” “mrt87_v2_ver1_BRAVO.nii”