When I use the fmriprep via singularity to process resting data, I get errors.
As shown in the figure (from .out and .error.text, respectively),
my data structure and code are also shown in the figure.
What could be the reason? How to debug?
Hi @Ericson,
You cannot make CIFTI outputs without freesurfer. Please remove the —fs-no-reconall flag.
Best,
Steven
Ah yes this has an issue dedicated to it as well: `--cifti-output` + `--fs-no-reconall` produces confusing error messages · Issue #3071 · nipreps/fmriprep · GitHub
oh, thanks. it’s ok!