Summary of what happened:
Hello, I have been using qsiprep for preprocessing DWI images, and I would like to use the preprocessed images in DWI space for subsequent reconstruction. However, I noticed that the preprocessed DWI images output in the output folder are aligned with the anatomical (anat) space. I prefer not to use them, as I am concerned that the registration interpolation process might reduce the accuracy of the DWI images. Can I use the eddy_corrected.nii.gz file and ‘eddy_corrected.eddy_rotated_bvecs’ file located in the work folder under /dwi_preproc_ses_baseline_wf/hmc_sdc_wf/eddy/ as a replacement instead?
Command used (and if a helper script was used, a link to the helper script or the command generated):
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Version:
Environment (Docker, Singularity / Apptainer, custom installation):
Data formatted according to a validatable standard? Please provide the output of the validator:
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Relevant log outputs (up to 20 lines):
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