What tool to use for Brain visualisation?

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I want to create this visualization of my saliency map, what tool should i use ??

Screenshot 2024-11-08 at 3.46.37 PM
Screenshot 2024-11-08 at 3.46.37 PM1284×478 75.5 KB

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Hi @NINAD_AITHAL,

You have several options available, including Nilearn (Making a surface plot of a 3D statistical map - Nilearn), ciftitools in R (GitHub - mandymejia/ciftiTools: ciftiTools R package). You can also check out this to generate example code (https://sidchop.shinyapps.io/braincode/). There may also be non-coding based options such as FreeView and Connectome Workbench to look at surface maps.

Best,
Steven

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And just to add to @Steven 's list of useful tools, there is also SUMA for Surface Mapping and visualization, in AFNI, with some tutorial videos here and here.

–pt