Hi! I am using singularity to running XCPD on HPC to precess HCPD data, but some subjects stuck above 20 hours. How can I solve this problem? Thank you very much!
Here is the code.
singularity run --cleanenv \
-B $fmriprep:/fmriprep \
-B $output/xcpd_rest_cifti/${subj}:/output \
-B $work_dir/xcpd_rest_cifti/${subj}:/work \
-B $freesurfer:/freesurfer \
-B $fs_license:/fs_license \
-B $templateflow:/ibmgpfs/softwarepackages/templateflow \
/ibmgpfs/singularity/xcp_d-0.10.0.simg \
/fmriprep /output participant \
-w /work \
--mode none \
--participant_label ${subj} \
--task-id REST1 \
--input-type fmriprep \
--fs-license-file /fs_license/license.txt \
--file-format cifti \
--despike n \
-p 36P \
--smoothing 2 \
--combine-runs n \
--head_radius 50 \
--motion-filter-type none \
--lower-bpf 0.01 \
--upper-bpf 0.08 \
--bpf-order 2 \
--resource-monitor \
--fd-thresh 100 \
--output-type censored \
--abcc-qc n \
--linc-qc n \
--min-coverage 0 \
--create-matrices all \
--warp-surfaces-native2std n
Here is the error
Running xcpd on participant: HCD2768981
2024-12-31 10:23:14,815 [ WARNING] WARNING: The sentry_sdk.metrics module is deprecated and will be removed in the next major release. Sentry will reject all metrics sent after October 7, 2024. Learn more: https://sentry.zendesk.com/hc/en-us/articles/26369339769883-Upcoming-API-Changes-to-Metrics
2024-12-31 10:23:14,825 [ WARNING] WARNING: `sentry_sdk.Hub` is deprecated and will be removed in a future major release. Please consult our 1.x to 2.x migration guide for details on how to migrate `Hub` usage to the new API: https://docs.sentry.io/platforms/python/migration/1.x-to-2.x
2024-12-31 10:23:15,773 [ WARNING] WARNING: sentry_sdk.configure_scope is deprecated and will be removed in the next major version. Please consult our migration guide to learn how to migrate to the new API: https://docs.sentry.io/platforms/python/migration/1.x-to-2.x#scope-configuring