Hello!
I am using dcm2bids version 3.0.1. When specifying custom_entities it does not use this when naming the file, instead it seems to think that I have multiple runs of the same task and appends run-x instead. I have pasted some of the config file below and the resulting filenames. The strange thing is that sometimes it appears to work, or will copy part of the name but not all of it. I assume I’m doing something wrong, any help would be much appreciated - thanks!
T1w image, sagital
{
"datatype": "anat",
"suffix": "T1w",
"custom_entities": "mprage-Sag-1mm",
"criteria": {
"SeriesDescription": "t1_mprage_1mmiso_sag_PAT2_nonse*",
"ImageOrientationText": "Sag"
}
},
Output filename: sub-pilot1_run-01_Sag-1mm_T1w.nii.gz
{
"datatype": "anat",
"suffix": "RB1map",
"custom_entities": "echo1",
"criteria": {
"SeriesDescription": "3DREAM_B1_250V",
"EchoNumber": "1"
}
},
Output filename: sub-pilot1_run-01_RB1map.nii.gz
fMRI task
{
“id”: “id_task-oddity-1mm_bold”,
“datatype”: “func”,
“suffix”: “bold”,
“custom_entities”: “task-oddity-1mm”,
“criteria”: {
“SeriesDescription”: “Oddity_EPI1p0mm_MB4_TR2_80sl”
},
“sidecarChanges”: {
“TaskName”: “Oddity”
}
},
Output filename: sub-pilot1_run-01_bold.nii.gz
fMRI task different resolution
{
"id": "id_task-oddity-0p8mm_bold",
"datatype": "func",
"suffix": "bold",
"custom_entities": "task-oddity-0p8mm",
"criteria": {
"SeriesDescription": "Oddity_EPI0p8mm_MB3_FLEET"
},
"sidecarChanges": {
"TaskName": "Oddity"
}
},
Output filename: sub-pilot1_run-02_bold.nii.gz
