I’m new here and hope I’m posting this correctly. Also hope there is someone out there who can help…
I am running os Catalina, and I have tried to install dcm2bids, dcm2niix and bidskit through git in terminal. I have also tried doing that in anaconda/spyder.
Now, when I run either of them, my dicoms are being converted to niix.gz and I get a json. BUT it seems as if each dcm file is being converted separately, I thus end up with almost as many nii’s and json as I have dcm’s. Does anybody have an idea why this could be? I tried with MRIcroGL, that produced the same results (except when I put ‘always merge regardless of difference’, but that doesn’t sound like a long term solution…or any real solution…).
edit: when looking at the multiple jsons, it looks all the same except the TriggerDelayTime, which seems to be added to the outputs files name as well, and each one produces a separate niix/json.
Thank you in advance,