Dcm2niix segmentation fault (core dumped)

1

Hello,

I am having trouble with dcm2niix for 1 participant (others with the same scan protocol are fine). I am converting a T1w dicom file… Getting an error related to “Segmentation fault”. Has this happened to anyone? Data coming from a Siemens scanner. For confidentiality, I’ve change the output file path to be [outputfilepath]

dcm2niix -o [outputfilepath] -f %p_%i -z n 5-T1w_MPR_R0.8C
Chris Rorden’s dcm2niiX version v1.0.20240202 (JP2:OpenJPEG) (JP-LS:CharLS) GCC8.4.0 x86-64 (64-bit Linux)
Found 1 DICOM file(s)
Segmentation fault (core dumped)

2

I believe this will be fixed with teh development branch, which you can compile yourself for Linux:

git clone --branch development https://github.com/rordenlab/dcm2niix.git
cd dcm2niix/console
make
./dcm2niix ....

If this fails, open a new issue on the dcm2niix Github page