This topic is a continuation of discussions started in Fmriprep 1.1.1 anat-only: troubleshooting talairach_afd error. The original problem with freesurfer was solved, but on closer look at the automatically generated
fmriprep reports, we observed that the quality of the subject <–> MNI template registration was poor.
I can also confirm that the problem of nonlinear registration is observed across all 30 OAS1 subjects processed through fmriprep 1.1.1 so far.
Error logs are included as part of the previous thread (link above).
Let me know if any further clarification is required.
Appreciate the help!