Very new to fmriprep and fmri so apologies if I miss any details.
I have just run fmriprep 1.4.1 using Docker on my Windows computer (also using fs and aroma) and up until this point it was running fine with no errors but I’ve just run a participant and come across a autorecon31 error in the html file. I had a browse on the forum and accordingly looked for an inactive version of freesurfer in my .bashrc file but was not able to find this.
Does anyone have any other ideas as to why this is happening or what I can do to resolve this error?
Many thanks in advance!