Hi @jd-lobo, the problem appears to be that you have a Python environment whose bin directory isn’t in your PATH. Can you try:
find ~/.local -name fmriprep-docker
If that doesn’t exist, then you probably just have a bad installation. Try:
pip uninstall fmriprep-docker
pip install --upgrade --user -v fmriprep-docker
Near the end, you should see something like:
Installing collected packages: fmriprep-docker
changing mode of /anaconda3/bin/fmriprep-docker to 755
The path prior to fmriprep-docker will be a path you need to add to your PATH environment variable. For example, it looks like you’re using bash, so if you had the same result as above, you should add to your ~/.bashrc:
export PATH="/anaconda3/bin:$PATH"
If you had /Users/juju/.local/bin/fmriprep-docker, then you would add:
export PATH="/Users/juju/.local/bin:$PATH"