Fmriprep html openning problem

1

Hello,

After running frmriprep on one subject in my local PC I faced error.
Actually, the folder of output is ok and all of file is cerated in Anat and func

but when I wanted to open html file to see confound and other items
I faced this error:

Access to the file was denied

The file at /home/user/outputmp13/sub-mp0013.html is not readable.

It may have been removed, moved, or file permissions may be preventing access.

I faced the same error when I opened jupyter notebook, but now its fix(without doing any special things).

Any suggestion would be appreciate.
Best, Roqa

2

Hello,

How are you trying to open the html?

Best,
Steven

3

Thank you so much for your answer.

like the last one that I did that
actually I had fmriprep on my linux and I worked with
but now because of the problem that I had by my Jupyter I uninstall and re install Linux and all the other software

I open the html by double click and opening by mozila firefox.

I appreciate your time and help

4

photo_5015273903731354357_y
photo_5015273903731354357_y1215×1280 173 KB

as you can see all the items have lock sign!

5

Can you see who has permission to those files? You can use the ls -l command.

6

total 196
-rw-r–r-- 1 root root 696 Sep 27 12:58 dataset_description.json
-rw-r–r-- 1 root root 49926 Sep 27 12:58 desc-aparcaseg_dseg.tsv
-rw-r–r-- 1 root root 49926 Sep 27 12:58 desc-aseg_dseg.tsv
drwxr-xr-x 2 root root 4096 Sep 27 09:22 logs
drwxr-xr-x 3 root root 4096 Sep 27 09:22 sourcedata
drwxr-xr-x 5 root root 4096 Sep 27 09:34 sub-mp0013
-rw-r–r-- 1 root root 74969 Sep 27 12:58 sub-mp0013.html

7

Are you the root user?

8

actually that a local laptop
and when I install Linux chose “/root” instead of “/”

9

Can you use the chmod command to change the permissions of the files?

10

chmod 777/output you mean?

11

you might need the -r flag to apply it recursively to the whole folder, but yes