Hi all I got the following error when i tried to run fmriprep: RuntimeError: Command: mri_robust_template --satit --mov /scratch/work/fmriprep_wf/single_subject_78_wf/anat_preproc_wf/anat_template_wf/n4_correct/mapflow/_n4_correct0/sub-78_ses-01_T1w_ras_corrected.nii /scratch/work/fmriprep_wf/sin…

quick guess, but I think with: --fs-license-file /home/ubuntu/projects/AN_project/license.txt The pathname has to be recognizable by the docker container, like with what you did with -v /home/ubuntu/projects/AN_project/INHIB:/data and specified the fmriprep input directory just by saying /data. …

Further info: http://fmriprep.readthedocs.io/en/latest/installation.html#the-freesurfer-license

Hi Thank you for the comment and link. It seems to work fine now. Thank you.

@silvano , can you provide the command that worked? I’m getting an almost identical issue as yours (ie brand new FS license but still being asked to get an up to date one due to GNU glibc) and have not had any success the last week or so. Thanks! edit: Oh geez, I didn’t realize this was from last Ja…

Neurostars

Fmriprep license file issue

oesteban February 8, 2019, 12:51am 6

FYI: fMRIPrep Tutorial

1 Like

MANAGED BY INCF