fMRIPrep Tutorial

oesteban · January 31, 2019, 11:33pm

With love to those ~40% of participants in our survey who wanted more educational materials for fMRIPrep. Franklin has put together a great guide, check it out!

fMRIPrep tutorial: Running the docker image | Stanford Center for Reproducible Neuroscience
http://reproducibility.stanford.edu/fmriprep-tutorial-running-the-docker-image/

emdupre · February 1, 2019, 2:04am

Thanks, @franklin !

meltemiatay · August 1, 2019, 6:49pm

Thank you! @oesteban, I will be following the tutorial and want to replicate similar steps on my data.

Shotgunosine · August 1, 2019, 7:08pm

Is there any guidance out there for what exactly we should be looking for in all of FMRIprep’s great QA output? If not, can I request that as a post sometime soon?

franklin · August 1, 2019, 8:30pm

hi @Shotgunosine

Thank you for raising this! We do not have this guidance (at least in a post/documented). I have added this to our log!

Thnk you,
Franklin

Shotgunosine · August 2, 2019, 3:40pm

I started putting together a guide here: https://github.com/nimh-mbdu/fmriprep_qa_guide/blob/master/README.md

I’d love go get any help or suggestions anyone has for this. I’m particularly unsure about what to review in these sections:

Variance explained by t/aCompCor components
Correlations among nuisance regressors