I’m running fmriprep on a single subject with 2 tasks. Each task has around 900 volumes.
I specify an external disk with 2TB as a working directory. I also use --the low-mem flag. I also use 18Gb of RAM for the docker.
I also tried to run fmriprep for each task separately.
But no matter what I do, I run into memory issues. I get an error message about the broken process pool.
Do you have any idea what else can be done for this dataset?
Why are you providing the low memory flag if you allow 18 gb of memory via docker access? We ran similar images (i.e., # of volumes) using the following----