fMRIprep- normalization template

fmriprep
templateflow
#1

Hello,

I just starting to use fMRIprep for my data analysis. I currently analyzing a dataset for children, and was wondering whether it would be possible to change the normalization template from MNI to a paediatric atlas template, in the pipeline? Any suggestions would be much appreciated!

Thank you!

#2

Have a look at https://github.com/poldracklab/fmriprep/issues/1084 - we would love your help implementing this.

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#3

Thank you! I will head over there right now!

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#4

This would be a great addition for those of us working with children!
Did you manage to find a workaround for normalising your data to a child template whilst still using fmriprep?

Many thanks,
Joff

#5

Hi @JoffJones, do you have a template you would like to use? We would be happy to work with you to make this usable in fMRIPrep.

#6

Hi @effigies, thank you for offering your support! I believe that one of your colleagues has already signposted a paediatric template to be used in fMRIPrep on the GitHub page:


http://nist.mni.mcgill.ca/?p=974

Covering 4.5-18.5 years this would be versatile for a number child/adolescent imaging studies, and would be suitable for our current work in a similarly aged sample.

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#7

Hi @effigies, I heard that the new templates have been added to templateflow and I was just wondering when this might be included in next fmriprep release?

Many thanks for all your help,
Joff

#8

It is currently available with 1.4.1rc4

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split this topic #9

8 posts were split to a new topic: Problems using pediatric template from TemplateFlow