I was wondering if anyone had developed a standardized protocol for dealing with the outputs of fMRIprep (the actual NIfTI files, or the HTML)? I was trying to train staff and students in my lab on fMRIprep checks, and was starting to develop some documents; I, however, thought I would see if others had compiled something similar and/or there were consensus documents for dealing with outputs?
The best analogs would be something like the guides that ENIGMA develop for Freesurfer troubleshooting / QC (e.g., http://enigma.ini.usc.edu/protocols/imaging-protocols/).
I searched on the forum a bit and didn’t find any relevant posts; I also looked on readthedocs, but again no luck. Any thoughts are deeply appreciated!