I have used fmriprep 1.5.4 to preprocess my data and then I used FSL FEAT to run my analysis.
I was hoping to use FSL’s featquery to pull ROI info from my data. For whatever reason I have failed to successfully do this. featquery says that the necessary warp files do not exist and therefore cannot use the ROI masks I am attempting to feed in. I have tried using masks already in MNI 2mm standard space (ones from FSL, I also resampled my data to 2mm isotropic using the res:2 tag in fmriprep).
Any advice on how to proceed would be greatly appreciated. I am hoping to obtain the % signal change in various motor areas. Is there a way to get featquery to work? If not then are there other tools I can use that are known to work with fmriprep’d data?