Thank you!
- Here is the bids tree folder for this subject. I renamed the topup runs (which are the type of fmap) into bids appropriate names and moved them into fmap folder (see screenshot) after making sure they were PA oriented (now I am not sure about this – please see #2 below)
- However, I am now not quite sure about the whole phase-encoding thing. If you look at the json file (aka freshly renamed toptup json by me) of this fmap, it indicates
j--encoding. This means PA encoding, correct? But could be AP as you previously said? I think I confused myself with this at this point…
I was reading more about phase encoding and topup runs here: PhaseEncodingDirection "i" and "j-" in .json file
- Our HPC where we run our analyses are very strict with their space limits so I was told installing and running conda will take up too much space. Would me downloading and uploading the templateflow onto directory without involving dataled work ok? I know it’s more manual work but not impossible I guess?
Thanks!
Gavkhar
sub-FACT130_ses-pre_dir-PA_epi.txt (2.9 KB)