I ran heudiconv on a set of dicoms that I have to convert to BIDS. In my output directory, I seem to get all the outputs and files from a cursory visual inspection, which is nice!
I ran heudiconv using SLURM on an HPC, and use a job array to spin off jobs for each participantXsession. Some but not all of my jobs timed out (I only requested a compute node for 12 hours). However, when I check the output folder it seems like everything is there.
I can maybe copy my .out and .err files (not sure if I can, need to check) but I am curious if:
- Anyone has seen this before? Should heudiconv take 12 hours to run on one session from one participant (there are multiple imaging files/tasks but still).
- How do I determine if it ran to completion on the nodes that hung since I see all the outputs I think I would expect (need to confirm)
Happy to provide more details (singularity command, etc.) if needed.