Hello,
I just came across this article on OSF Preprints on brain extraction in rats called artsBrainExtraction. Is there any way I can run this tool on a windows system? As far as I understand I will need nirodents installed.
Best,
Bruno
1 Like
Hi Bruno -
Thanks for your interest in artsBrainExtraction!
NiRodents is available as a python package, so it can be used across operating systems. However, we recommend using Docker to ensure the dependencies are available for the toolbox. Please see my previous reply: about how to get started with NiRodents (and artsBrainExtraction) with a docker image.
Otherwise, NiRodents is available via Pypi and can be used with python and is bundled with some shell command-line interfaces for the most common tools.
All the best,
Eilidh
Hello,
can you explain the usage of the package in python? Are there any examples of its usage for rat brain extraction?