I’m using fmriprep 1.4.1 to do multi-session preprocessing on lesioned brains. After checking the normalisation logs for fmriprep_wf.single_subject_xxx_wf.anat_preproc_wf.anat_norm_wf.registration, in execution inputs lesion mask is undefined.
The lesion mask is in the subject’s anat directory with the naming convention specified (sub-xxx_T1w_label-lesion_roi.nii.gz).
I’ve attached a copy of the report.
Thanks. report.txt (4.5 KB)