Mriqc in combination with singularity 3

singularity
mriqc
#1

Dear (mriqc) experts,

I have been running mriqc on HPC. This worked quite well in the past.
However, the HPC colleages upgraded the singularity version (3.0.1-1.e17)
My mriqc container crashes and after rebuilding (following Preferred way to create MRIQC singularity container?) it is broken and cannot find the run driver after calling:
FATAL: no run driver found inside container

Did anyone solve this matter or know howto? Otherwise we’ll have to rollback the singularity version.

Many thanks! Jan-Bernard

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#2

Maybe @vsoch would have some ideas of why this could be happening?

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#3

Yes I’d be happy to look into this. Could you point me to your recipe?

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#4

Dear Oscar and Vanessa,

Thanks for your concern.
I have no particular recipe, and issue the command:
$> singularity pull docker://poldracklab/mriqc:latest

WARNING: Authentication token file not found : Only pulls of public images will succeed

INFO: Starting build…

Getting image source signatures

Skipping fetch of repeat blob sha256:c832082614738021cf51d68e84457a45a3f85dbe0ddbb93000c5dc5aae77fe93

INFO: Build complete: mriqc_latest.sif

$> singularity run mriqc_latest.sif

WARNING: passwd file doesn’t exist in container, not updating
WARNING: group file doesn’t exist in container, not updating
FATAL: no run driver found inside container

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