Topics tagged singularity

Topic	Replies	Views	Activity
Looking for some troubleshooting suggestions for fMRIPrep singularity , fmriprep	1	90	October 30, 2020
Post-fMRIPrep Processing - Container Error nipype , fmriprep , singularity , fmriprep	7	373	October 29, 2020
Singularity and heudiconv bids , singularity , heudiconv	8	1629	October 15, 2020
Jupyter notebook in singularity image jupyter , singularity	8	2389	August 31, 2020
Clarification regarding mounting data to Singularity container singularity	2	133	August 14, 2020
Processing HCP-Aging dataset in BIDS format bids , docker , singularity , hcp	10	342	July 23, 2020
Purple rain: T1 segmentation fails but no errors fmriprep , singularity , fmriprep	5	228	July 15, 2020
ANTs multivariate template construction and Singularity singularity , hpc , ants	7	418	June 30, 2020
Mriqc v0.15.2: read-only error on HPC cluster - OSError: [Errno 30] Read-only file system: '/home/bidsapp/.cache/mriqc' mriqc , singularity	3	221	June 4, 2020
Problem using neurodocker and singularity-hub singularity , neurodocker	10	464	May 22, 2020
MRIQC error on Singularity mriqc , singularity	8	365	April 20, 2020
Fmriprep in singularity not running when submitted with qsub fmriprep , singularity	5	283	January 28, 2020
BIDS root does not exist fMRIprep Singularity fmriprep , singularity	4	466	November 8, 2019
Modeling Task-Driven Activity in xcpengine fmriprep , singularity , xcpengine	2	239	October 28, 2019
Running BIDS App freesurder on HPC bids-app , freesurfer , singularity , hpc	1	190	October 16, 2019
Issue Running fmriprep with Singularity Image fmriprep , singularity	9	1140	September 29, 2019
Memory allocation issues with fMRIPrep, Singularity and HPC fmriprep , singularity	6	1387	July 19, 2019
fMRIPrep: TemplateFlow fails with OSError: [Errno 30] Read-only file system fmriprep , singularity , templateflow	1	411	July 9, 2019
Issue running newly created fMRIPrep Singularity Image fmriprep , singularity	3	437	June 18, 2019
Problems building singularity image for fMRIPrep 1.4.0 fmriprep , singularity	5	321	May 22, 2019
Mriqc in combination with singularity 3 mriqc , singularity	5	695	May 11, 2019
Overwriting heudiconv sub.auto.txt and sub.edit.txt singularity , heudiconv	1	390	May 2, 2019
fMRIPrep 1.3.x on Singularity - git-annex permission errors fmriprep , singularity	22	1018	March 7, 2019
Fmriprep and docker2singularity neuroimaging , fmriprep , docker , singularity	5	499	November 25, 2018
Freesurfer License Issue in fmriprep 1.1.4 fmriprep , freesurfer , singularity	6	604	August 15, 2018
Read-only error in mriqc using singularity on cluster docker , singularity	3	981	July 11, 2018
Error running FMRIPREP from Singularity image fmriprep , singularity	7	717	May 9, 2018
Singularity fmriprep "export.opts" error fmriprep , freesurfer , singularity	8	815	March 30, 2018
Error creating singularity image for fmriprep fmriprep , docker , singularity	20	2086	March 1, 2018
ValueError: embedded null byte; during fmriprep 1.0.0-rc10 fmriprep , singularity , heudiconv	9	1876	November 20, 2017