Mrtrix3 on 'Preprocessed Recommended' HCP (aging/development, BANDA) diffusion data

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1

I’ve been using mrtrix3 to construct structural connectomes in other datasets and use a standard pipeline consisting of

  1. dwidenoise
  2. mrdegibbs
  3. dwifslpreproc
  4. dwibiascorrect
  5. dwi2response
  6. dwi2fod
  7. tckgen
  8. tck2connectome

If i’m using the HCP ‘Preprocessed Recommended’ diffusion data (i.e., data.nii.gz files), i imagine that i can skip steps 1 to 3, and start from 4?