OSError: [Errno 28] No space left on device - templateflow?

[pan]

Hi,
I try to run fmriprep but i get the “OSError: [Errno 28] No space left on device”, towards the end of preprocessing a subject. The preproc runs for some time but after a while i get this error.

Notably, fmriprep was running before and I preprocessed the 2nd run; now I want to run the preproc for the 1st run in this dataset.

After this error I tried to export the home/.cache/templateflow (see code below) but still I get the same erorr.

I got these ideas from;

Problems using pediatric template from TemplateFlow

Thank you for making such template available! However, I just tried it today and it ran into the error without no real output at all in the fmriprep folder. Also shell into the 1.4.1rc4 simg, it doesn’t show the regular templateflow folder as in 1.4.0.simg but only ICA-AROMA and freesurfer. Is there something wrong in my built singularity image? Thanks! [image]

Please note:
I have set my workingdir & have available space. Our HPC has recently an SSL issue i imagine this may be related.(?) i suspect that we have SSL certificate issue and the system doesnt now download anymore the template flow (before I didnt export any templateflow path but code worked!)

Please help me solve this issue. Any suggestion?

I run:

export SINGULARITYENV_TEMPLATEFLOW_HOME=/home/iliopoul/.cache/templateflow

TEMPLATEFLOW_DIR=/home/iliopoul/.cache/templateflow

singularity --verbose  run -B /storage/users -B ${TEMPLATEFLOW_DIR}:/opt/templateflow /usr/local/bin/fmriprep-20.2.6.simg $bids_root_dir $out_dir participant \
--participant-label $subj \
--bids-filter-file /storage/users/iliopoul/PHD/data/bids_filter_memtrain2_run1.json \
-w $workdir \
--md-only-boilerplate \
--fs-license-file /storage/users/iliopoul/fs_license.txt \
--fs-no-reconall \
--output-spaces MNI152NLin2009cAsym:res-2 \
--verbose \
--stop-on-first-crash \
-t itemobject \
--write-graph \