I’m using FSL feat to analyze my fmriprep output; however, I wanted to clarify which functional output file is appropriate. In fmriprep I specified
--use-aroma, so in addition to the
preproc_bold.nii.gz file I have a
I understand that the
smoothAROMAnonaggr_bold.nii.gz file has undergone spatial smoothing, and I am under the impression that it’s also non-aggressively denoised. This leads me to believe that this is the file I should use in analyses, but I’ve noticed that the
preproc_bold.nii.gz file is generated after. Am I correct in assuming then that the
smoothAROMAnonaggr_bold.nii.gz is proper file to use (in addition to regressing out confounds from
Thanks for the clarification.