Standarized Resting State processing with fmriprep

fmriprep
rest
resting-state
#1

Hi all,

Our lab has been looking for a standardized way to process output resting state scans from fmriprep.
We are currently using a home-brewed matlab script for filtering, scrubbing, regressing out motion noise, CSF, WM, and interpolation. Is there a more standardize tool for processing of resting state images that utilizes the bids structures and containers?
We have glanced at NiLearn, but it seems like it is geared more towards the analysis and visualization side of things

Thanks,
Mitch

Best practices for AROMA and fmriprep
#2

Hi @mitchem890,

the amazing CPAC should be exactly what you’re looking for: comprehensive preprocessing, cool analytic tools and if you want everything packed within a docker container as a BIDS app.

HTH, cheers, Peer

2 Likes
#3

Other options (that should work with FMRIPREP outputs):

2 Likes
#4

Any favorites for surface resting state pipelines?