Using FSL dual_regression and keep receiving this error

fmri
neuroimaging
fsl
#1

Hi all! I am trying to run a dual_regression on our multi-temporal concatenation ICA and keep receiving this error (I’m using Sherlock in Terminal):

/bin/sh: line 1: syntax error near unexpected token `53_ICA.dr/scripts+logs/drA’

/bin/sh: line 1: `file (53_ICA.dr/scripts+logs/drA) does not exist -T 5 -N drB -l 53_ICA.dr/scripts+logs 53_ICA.dr/scripts+logs/drB’

Here is my script!

#!/bin/bash

#SBATCH --job-name=52_ICA

#SBATCH --time=24:00:00

#SBATCH --partition=cbohon

#SBATCH --mem=16000

ml biology labs poldrack fsl/5.0.10

srun --x11 dual_regression /home/groups/cbohon/FAB/analysis/rest/ICA/preliminary++++.gica/groupmelodic.ica/melodic_IC.nii.gz 1 53_ICA_GLM.mat 53_ICA_GLM.con 5000 53_ICA.dr ‘cat home/groups/cbohon/FAB/analysis/rest/ICA/preliminary++++.gica/filelist.txt’

for j in $(squeue -u cbohon -o %I -h); do

scontrol update jobid $j partition=cbohon;

done

Thanks y’all!