Hi all! I am trying to run a dual_regression on our multi-temporal concatenation ICA and keep receiving this error (I’m using Sherlock in Terminal):
/bin/sh: line 1: syntax error near unexpected token `53_ICA.dr/scripts+logs/drA’
/bin/sh: line 1: `file (53_ICA.dr/scripts+logs/drA) does not exist -T 5 -N drB -l 53_ICA.dr/scripts+logs 53_ICA.dr/scripts+logs/drB’
Here is my script!
#!/bin/bash
#SBATCH --job-name=52_ICA
#SBATCH --time=24:00:00
#SBATCH --partition=cbohon
#SBATCH --mem=16000
ml biology labs poldrack fsl/5.0.10
srun --x11 dual_regression /home/groups/cbohon/FAB/analysis/rest/ICA/preliminary++++.gica/groupmelodic.ica/melodic_IC.nii.gz 1 53_ICA_GLM.mat 53_ICA_GLM.con 5000 53_ICA.dr ‘cat home/groups/cbohon/FAB/analysis/rest/ICA/preliminary++++.gica/filelist.txt’
for j in $(squeue -u cbohon -o %I -h); do
scontrol update jobid $j partition=cbohon;
done
Thanks y’all!