Utilize TOPUP fieldmap data into fMRIprep

[AmirHussein]

Hi all,

Thanks for the comments. Realized that there is another thread exactly looking into what I am trying to achieve: Using SynBOLD for fMRIprep.

Using synthetic field map from synbold-disco with fmriprep

Hi all, Thanks to all the contributors to this interesting and useful thread! I have tried fmriprep23.# for a couple of fMRI runs either using its fieldmap-less or with fieldmap susceptibility distortion correction on a couple of datasets, however they all made more distortions (discussed in a thread here). Thus, I am now trying SynBOLD to see whether I can get a detour for that SDC part of fmriprep. Also, I am currently using an old dataset with no fieldmap data available. So far, results fro…