I’m running fmriprep 1.4.1 on a linux cluster and paving the way for our large lab to move to fmriprep. I had to pip install fmriprep because our admins don’t allow docker or singularity.
Everything is working great and I get no errors. There are some sklearn deprecation warnings that seem innocuous for now.
The issue I have is with each subject’s summary report. Unless --ignore fieldmaps is called, the reports don’t include any functional figures, although those figures exist in the appropriate reportlets subdir. The html report navbar does not include the “functional” tab, either. If I do call --ignore fieldmaps, the report includes functional figures and navbar tab, but obviously fieldmaps are left out of the pipeline and report. Again, there are no errors for either call.
Does anyone have an intuition as to what is happening or how I can attempt to debug this? Apologies that I’m not providing much to go off of. At this point, I’m at a loss.