Topics tagged hpc

Topic	Replies	Views	Activity
NeuroHub/CBRAIN Training Workshops 2025 and a chance to win an Amazon Gift card! Announcements genomics , neuroimaging , hpc , pipeline , datasets , visualizations	0	402	January 22, 2025
QSIPrep workflow error with synthseg Software Support hpc , diffusion-mri , synthseg , qsiprep	2	610	November 17, 2024
fMRIprep Error on HPC System Software Support fmriprep , hpc , nibabel , nipype	8	1094	March 15, 2024
Issues with home directory in fMRIprep? Software Support hpc	1	663	July 9, 2023
GSoC 2023 Project Idea 16.1 Adding new workers and resource management to new dataflow engine written in Python: Pydra (175 h) GSoC nipype , python , hpc , schedulers , pydra , gsoc2023	44	3028	March 29, 2023
Heudiconv_filelock_timeout hpc , heudiconv , neuroimaging	7	768	January 4, 2023
fMRIPrep via Singularity: first subject runs fine, others crash when using HPC slurm array job hpc , singularity	7	1698	October 15, 2022
Qsiprep: Cannot run qsiprep. Missing dependencies: hpc , singularity , freesurfer , qsiprep	3	1968	August 1, 2022
Qsiprep: Node eddy failed to run on host sms hpc , singularity , qsiprep	14	1750	April 14, 2022
GSoC 2022 Project Idea 17.2: Adding new workers and resource management to new dataflow engine written in Python: Pydra (175 h) GSoC hpc , nipype , python , gsoc2022	6	1319	March 15, 2022
Look for advice on running Singularity containers on HPC clusters hpc , singularity , qsiprep	3	1289	September 16, 2021
ANTs multivariate template construction and Singularity hpc , ants , singularity	6	4157	June 30, 2020
GSoC 2020 project idea 1: TVB: Improving personalized models of fMRI recordings including individual region-specific HRF in The Virtual Brain GSoC git , hpc , python , dynamical-systems	13	2150	March 29, 2020
GSoC 2020 project idea 13: Implementation of multi-objective and parallel optimizers for neuronal signaling models GSoC hpc , python , mpi	4	1412	March 17, 2020
Running BIDS App freesurder on HPC hpc , bids-app , singularity , freesurfer	0	1105	October 16, 2019
GSoC Project Idea 1: Accessible High-Performance Computing with CBRAIN GSoC hpc , jupyter , python , rest	22	5114	March 27, 2019
Datalad and gitolite hpc , datalad	3	1634	March 21, 2019
Nipype Workflow execution using PBS hpc , nipype	2	1179	August 30, 2018
Question about n_threads and mem_mb options in fmriprep singularity , fmriprep , hpc	2	1383	September 15, 2017