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Free water corrected DTI: issue with MD images
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1
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536
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December 5, 2025
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AFNI + FreeSurfer FSvent workflow on Neurodesk containers (Puma HPC): @SUMA_Make_Spec_FS cannot find mris_convert
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2
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214
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December 3, 2025
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No multi-echo (T2*, etc.) in the boilerplate text?
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6
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223
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December 2, 2025
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Exception raised while executing node topup
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1
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145
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November 30, 2025
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TDT: Bootstrap cross-validation for two-class between-group searchlight SVM
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0
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134
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November 28, 2025
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Dcm2bids 3.2.0: IntendedFor fails for some ids but works for others despite identical configs
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1
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123
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November 27, 2025
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Use_syn_sdc flag erroring out
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9
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202
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November 27, 2025
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Dcm2bids: using epi as a field map
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3
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141
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November 26, 2025
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Mismatch fMRIPrep and FSL template: left / right switch?
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4
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211
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November 26, 2025
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Is there a way to plot surface images with transparent thresholding? #nilearn
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2
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190
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November 26, 2025
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M0 file not found for ASLPrep
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2
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162
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November 26, 2025
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EPI to T1w misalignment
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4
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275
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November 24, 2025
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Reuse and rerunning with fMRIPrep 25.2.2
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4
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290
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November 24, 2025
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BIDS validator error: NIFTI_HEADER_UNREADABLE
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11
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375
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November 24, 2025
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QSIRecon mrtrix_5tt_fast not creating or using 5tt?
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0
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149
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November 22, 2025
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Re-use previous outputs in QSIRecon
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5
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142
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November 21, 2025
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Re-running pyAFQ segmentation using Recobundles after initial run with AFQ-waypoints
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2
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129
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November 21, 2025
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Mismatch between b-table and the loaded images
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7
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505
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November 21, 2025
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Error occurring in the SyN node of fMRIPrep
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15
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1024
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January 18, 2024
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Running fMRIPrep in Neurodesk
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32
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2306
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November 21, 2025
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Will fMRIPrep 25.x work with FreeSurfer 8.x?
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8
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293
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November 21, 2025
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QSIPrep 1.0.2 SynthSeg failure
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5
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431
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November 21, 2025
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Template script for running qsiprep then qsirecon?
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7
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227
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November 20, 2025
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TractSeg Producing Empty Tractograms from QSIPrep Outputs
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1
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183
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November 19, 2025
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XCP-D error output: Can't find anatomical image
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8
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436
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November 16, 2025
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3dTshift in fMRIPrep
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1
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180
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November 16, 2025
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How to correct free water with one shell value dwi imaging
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4
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212
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November 14, 2025
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Issues registering FA map from MRtrix to MNI space (qform_code/sform_code differences vs DIPY output)
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0
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136
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November 14, 2025
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Co-registration of MRI to Allen Mouse Brain Atlas
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3
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276
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November 14, 2025
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Longitudinal flag
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2
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160
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November 13, 2025
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