Topics tagged singularity

Topic	Replies	Views	Activity
Jupyter notebook in singularity image jupyter , singularity	7	6973	August 31, 2020
Clarification regarding mounting data to Singularity container singularity	1	457	August 14, 2020
Purple rain: T1 segmentation fails but no errors fmriprep , singularity	4	953	July 15, 2020
ANTs multivariate template construction and Singularity singularity , hpc , ants	6	2694	June 30, 2020
Mriqc v0.15.2: read-only error on HPC cluster - OSError: [Errno 30] Read-only file system: '/home/bidsapp/.cache/mriqc' mriqc , singularity	2	1146	June 4, 2020
Problem using neurodocker and singularity-hub singularity , neurodocker	9	2120	May 22, 2020
MRIQC error on Singularity mriqc , singularity	7	1345	April 20, 2020
Fmriprep in singularity not running when submitted with qsub fmriprep , singularity	4	871	January 28, 2020
BIDS root does not exist fMRIprep Singularity fmriprep , singularity	3	1552	November 8, 2019
Modeling Task-Driven Activity in xcpengine fmriprep , singularity , xcpengine	1	608	October 28, 2019
Running BIDS App freesurder on HPC bids-app , freesurfer , singularity , hpc	0	669	October 16, 2019
Issue Running fmriprep with Singularity Image fmriprep , singularity	8	2664	September 29, 2019
Memory allocation issues with fMRIPrep, Singularity and HPC fmriprep , singularity	5	3832	July 19, 2019
fMRIPrep: TemplateFlow fails with OSError: [Errno 30] Read-only file system fmriprep , singularity , templateflow	0	1525	July 9, 2019
Issue running newly created fMRIPrep Singularity Image fmriprep , singularity	2	900	June 18, 2019
Problems building singularity image for fMRIPrep 1.4.0 fmriprep , singularity	4	781	May 22, 2019
Mriqc in combination with singularity 3 mriqc , singularity	4	1548	May 11, 2019
Overwriting heudiconv sub.auto.txt and sub.edit.txt singularity , heudiconv	0	1145	May 2, 2019
fMRIPrep 1.3.x on Singularity - git-annex permission errors fmriprep , singularity	21	2784	March 7, 2019
Fmriprep and docker2singularity neuroimaging , fmriprep , docker , singularity	4	939	November 25, 2018
Freesurfer License Issue in fmriprep 1.1.4 fmriprep , freesurfer , singularity	5	1113	August 15, 2018
Read-only error in mriqc using singularity on cluster docker , singularity	2	2937	July 11, 2018
Error running FMRIPREP from Singularity image fmriprep , singularity	6	1286	May 9, 2018
Singularity fmriprep "export.opts" error fmriprep , freesurfer , singularity	7	1482	March 30, 2018
Error creating singularity image for fmriprep fmriprep , docker , singularity	19	3400	March 1, 2018
ValueError: embedded null byte; during fmriprep 1.0.0-rc10 fmriprep , singularity , heudiconv	8	3159	November 20, 2017
Preferred way to create MRIQC singularity container? mriqc , singularity	3	1864	November 2, 2017
SPM permission denied on HPC in a Singularity container nipype , singularity , spm	1	1324	September 20, 2017
Question about n_threads and mem_mb options in fmriprep fmriprep , singularity , hpc	2	972	September 15, 2017
Singularity pull fmriprep: "Could not obtain the container size" fmriprep , singularity	3	1727	August 8, 2017