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QSIRecon: Help Understanding QSIRecon 4S Atlases and Connectivity Outputs
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4
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113
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December 8, 2025
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QSIPrep segmentation outputs
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2
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99
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December 5, 2025
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Quality Control for amico_noddi and dsi_studio_autotrack Outputs
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6
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124
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December 5, 2025
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QSIRecon mrtrix_5tt_fast not creating or using 5tt?
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0
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128
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November 22, 2025
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Re-use previous outputs in QSIRecon
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5
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117
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November 21, 2025
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Template script for running qsiprep then qsirecon?
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7
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192
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November 20, 2025
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Accessing built-in pyAFQ white matter tracts (optic tract/nerve)
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0
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148
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November 3, 2025
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How to compute node-wise custom metrix (like FD/ICVF/ODI) after QSIRecon-pyAFQ?
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3
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267
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October 31, 2025
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Normalization and group-averaging of count connectivity matrices from QSIRecon (mrtrix_multishell_msmt_ACT-fast)
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12
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345
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October 28, 2025
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How to use .trk file produced by QSIRecon with "----recon_spec pyafq_tractometry" to extract properties of custom fMRI imaging
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3
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193
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October 28, 2025
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Crash during connectivity matrix
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6
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205
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October 27, 2025
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Probability maps in qsirecon pyafq pipeline
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2
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266
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October 21, 2025
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How to combine pyAFQ bundles and MRtrix SIFT2 streamline weight?
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15
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549
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October 10, 2025
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Some QSIRecon runs encountering CsdNanResponseError in PyAFQ
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25
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788
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October 3, 2025
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How to add custom atlas in QSIRecon:1.0.0
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11
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1499
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September 6, 2025
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Recommended Built-In Reconstruction & Tractography Workflows in QSIRecon for DKI Data
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4
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466
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August 28, 2025
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QSIRecon working directory
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2
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422
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August 12, 2025
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How to preprocess and combine multi-acquisition DWI scans collected weeks apart using QSIPrep?
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3
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437
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July 31, 2025
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Connectome / connectivity map generating command in QSIRecon?
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5
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441
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July 25, 2025
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QSIRecon template_name set to None
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26
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861
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July 21, 2025
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Recon-spec custom amico noddi, not outputting to output dir
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2
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395
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July 7, 2025
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QSIRecon stuck on Tractography step since 2 days
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5
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607
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July 2, 2025
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QSIPrep 1.0.0 memory error and QSIRecon 1.1.0 PYAFQ & DSI Studio unable to run
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3
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747
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June 20, 2025
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What are the differences between the FA images estimated by different Reconstruction Workflows?
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1
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395
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May 28, 2025
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QSIRecon and free water DTI
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1
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430
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May 27, 2025
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Dsi_studio_gqi expected outputs using QSIRecon
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2
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602
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April 24, 2025
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Qsirecon "dsi_studio_autotrack"
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19
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894
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March 17, 2025
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QSIRecon failing for analysis_level flag
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3
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623
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February 20, 2025
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pyAFQ with anatomical constraints
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5
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710
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February 17, 2025
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Qsirecon_Error during execution
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8
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741
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February 2, 2025
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